yybE [2018-05-17 15:55:44]

similar to transcriptional regulator ([SW|LysR family])

locus: BSU40670

pI: 7.30

mw: 31.26 kDa

protein length: 278 aa

gene length: 834 bp

function: unknown

product: transcriptional regulator ([SW|LysR family])

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 4,180,564 → 4,181,442

The protein

Protein family

• [SW|LysR family]

Structure

• [PDB|5Y2V] (OxyR from Pseudomonas aeruginosa, 28% identity)

Expression and Regulation

Operons

• genes: [gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]-[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]-[gene|33C3EDF3709AC835C9C50B1B7978BA7C23EC9B9E|yybC]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-B849 (yybE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1848 NBRP B. subtilis, Japan]
• BKE40670 (Δ[gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTATCATCTCTCCTTAT, downstream forward: _UP4_TTTTCTGAGTAGGAAGGATT
• BKK40670 (Δ[gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTATCATCTCTCCTTAT, downstream forward: _UP4_TTTTCTGAGTAGGAAGGATT